3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06968

Details:

PFam ID : PF06968

PFam Domain Description : Biotin and Thiamin Synthesis associated domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 1177

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06968	B2AZ84_PODAN_117_430	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06968	D8JYX4_HYPDA_225_290	99.4

Sequence based PCA Plot of the family - PF06968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=95 Length=8
Motif3 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay