3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06965

Details:

PFam ID : PF06965

PFam Domain Description : Na+/H+ antiporter 1

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 638

Average sequence length: 370.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06965	NHAA_RICRO_1_265	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06965	D4INC7_9BACT_6_436	100

Sequence based PCA Plot of the family - PF06965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=74 Length=8
Motif3 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay