3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06964

Details:

PFam ID : PF06964

PFam Domain Description : Alpha-L-arabinofuranosidase C-terminus

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 563

Average sequence length: 200.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06964	B9FSJ8_ORYSJ_140_215	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06964	D1N211_9BACT_309_657	100

Sequence based PCA Plot of the family - PF06964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay