3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06963

Details:

PFam ID : PF06963

PFam Domain Description : Ferroportin1 (FPN1)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 143

Average sequence length: 321.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06963	B9FSJ8_ORYSJ_140_215	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06963	A7RY83_NEMVE_1_524	100

Sequence based PCA Plot of the family - PF06963 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay