3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06957

Details:

PFam ID : PF06957

PFam Domain Description : Coatomer (COPI) alpha subunit C-terminus

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 180

Average sequence length: 349.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06957	B4FD27_MAIZE_1_97	67.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06957	C5LE07_9ALVE_837_1258	100

Sequence based PCA Plot of the family - PF06957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=272 Length=8
Motif2 Start=248 Length=11
Motif3 Start=357 Length=8
Motif4 Start=333 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay