3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06955

Details:

PFam ID : PF06955

PFam Domain Description : Xyloglucan endo-transglycosylase (XET) C-terminus

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 456

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06955	A9RNQ8_PHYPA_231_283	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06955	Q70JE1_LACSA_135_169	99.7

Sequence based PCA Plot of the family - PF06955 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay