3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06953

Details:

PFam ID : PF06953

PFam Domain Description : Arsenical resistance operon trans-acting repressor ArsD

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 149

Average sequence length: 115.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06953	D2NXW3_LISM1_12_111	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06953	D2RLF4_ACIFV_3_160	100

Sequence based PCA Plot of the family - PF06953 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=4 Length=18
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay