3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06951

Details:

PFam ID : PF06951

PFam Domain Description : Group XII secretory phospholipase A2 precursor (PLA2G12)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 60

Average sequence length: 161.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06951	B3RKT8_TRIAD_11_186	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06951	D6RBP5_HUMAN_8_70	100

Sequence based PCA Plot of the family - PF06951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=110 Length=8
Motif2 Start=51 Length=8
Motif3 Start=69 Length=8
Motif4 Start=92 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay