3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06943

Details:

PFam ID : PF06943

PFam Domain Description : LSD1 zinc finger

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 114

Average sequence length: 24.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06943	B8BAG4_ORYSI_47_70	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06943	B8BAG4_ORYSI_47_70	100

Sequence based PCA Plot of the family - PF06943 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay