3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06941

Details:

PFam ID : PF06941

PFam Domain Description : 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 243

Average sequence length: 166.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06941	C3RPY3_9FIRM_11_148	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06941	D2UZU4_NAEGR_23_229	100

Sequence based PCA Plot of the family - PF06941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=62 Length=8
Motif3 Start=127 Length=8
Motif4 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay