3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06940

Details:

PFam ID : PF06940

PFam Domain Description : Domain of unknown function (DUF1287)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 74

Average sequence length: 154.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06940	E7HVA1_ECOLX_39_109	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06940	A9GPU4_SORC5_65_232	100

Sequence based PCA Plot of the family - PF06940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=108 Length=8
Motif2 Start=34 Length=8
Motif3 Start=160 Length=8
Motif4 Start=73 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay