3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06934

Details:

PFam ID : PF06934

PFam Domain Description : Fatty acid cis/trans isomerase (CTI)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 75

Average sequence length: 645.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06934	A7BV89_9GAMM_122_461	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06934	Q21NT9_SACD2_100_827	100

Sequence based PCA Plot of the family - PF06934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=689 Length=11
Motif2 Start=17 Length=11
Motif3 Start=88 Length=11
Motif4 Start=151 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay