3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06925

Details:

PFam ID : PF06925

PFam Domain Description : Monogalactosyldiacylglycerol (MGDG) synthase

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 314

Average sequence length: 161.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06925	Q0RTB7_FRAAA_123_229	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06925	E3PWA8_CLOSD_17_220	100

Sequence based PCA Plot of the family - PF06925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=99 Length=11
Motif3 Start=115 Length=8
Motif4 Start=68 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay