3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06907

Details:

PFam ID : PF06907

PFam Domain Description : Latexin

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 20

Average sequence length: 183.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06907	D2HAE4_AILME_3_165	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06907	F1P0G7_CHICK_7_225	100

Sequence based PCA Plot of the family - PF06907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay