3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06904

Details:

PFam ID : PF06904

PFam Domain Description : Extensin-like protein C-terminus

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 206

Average sequence length: 168.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06904	B9R1Y5_9RHOB_75_261	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06904	B9R1Y5_9RHOB_75_261	100

Sequence based PCA Plot of the family - PF06904 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay