3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06894

Details:

PFam ID : PF06894

PFam Domain Description : Bacteriophage lambda minor tail protein (GpG)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 30

Average sequence length: 117.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06894	A6AUC3_VIBHA_4_138	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06894	E4WL31_BPPH8_1_128	100

Sequence based PCA Plot of the family - PF06894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay