3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06890

Details:

PFam ID : PF06890

PFam Domain Description : Bacteriophage Mu Gp45 protein

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 107

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06890	A7VYJ5_9CLOT_18_116	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06890	E7H532_9BURK_9_204	100

Sequence based PCA Plot of the family - PF06890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay