3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06886

Details:

PFam ID : PF06886

PFam Domain Description : Targeting protein for Xklp2 (TPX2)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 126

Average sequence length: 54.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06886	Q9ZWA0_ARATH_645_690	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06886	D0N9G1_PHYIT_698_755	98.4

Sequence based PCA Plot of the family - PF06886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay