3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06874

Details:

PFam ID : PF06874

PFam Domain Description : Firmicute fructose-1,6-bisphosphatase

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 206

Average sequence length: 605.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06874	F16PC_DESPS_6_597	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06874	D4KES5_9FIRM_1_178	100

Sequence based PCA Plot of the family - PF06874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay