3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06873

Details:

PFam ID : PF06873

PFam Domain Description : Cell surface immobilisation antigen SerH

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 189

Average sequence length: 153.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06873	Q22VA5_TETTH_1_157	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06873	Q23WX0_TETTH_1_115	98.4

Sequence based PCA Plot of the family - PF06873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=11
Motif4 Start=113 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay