3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06870

Details:

PFam ID : PF06870

PFam Domain Description : A49-like RNA polymerase I associated factor

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 159

Average sequence length: 325.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06870	A2Q1X0_MEDTR_3_240	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06870	A8NJ81_COPC7_44_435	100

Sequence based PCA Plot of the family - PF06870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay