3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06859

Details:

PFam ID : PF06859

PFam Domain Description : Bicoid-interacting protein 3 (Bin3)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 111

Average sequence length: 100.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06859	B6JVZ4_SCHJY_205_263	59.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06859	D7FLW6_ECTSI_352_463	99.0

Sequence based PCA Plot of the family - PF06859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=106 Length=8
Motif3 Start=41 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay