3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06858

Details:

PFam ID : PF06858

PFam Domain Description : Nucleolar GTP-binding protein 1 (NOG1)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 176

Average sequence length: 56.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06858	Q8I1U1_PLAF7_518_578	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06858	A1RX70_THEPD_235_291	100

Sequence based PCA Plot of the family - PF06858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=8
Motif2 Start=4 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay