3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06857

Details:

PFam ID : PF06857

PFam Domain Description : Malonate decarboxylase delta subunit (MdcD)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 234

Average sequence length: 84.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06857	A5TTE7_FUSNP_2_28	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06857	C2KZY9_9FIRM_10_95	100

Sequence based PCA Plot of the family - PF06857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=74 Length=8
Motif3 Start=9 Length=14
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay