3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06841

Details:

PFam ID : PF06841

PFam Domain Description : T4-like virus tail tube protein gp19

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 405

Average sequence length: 139.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06841	Q2W633_MAGSA_1_68	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06841	E1XT75_9CAUD_72_206	99.7

Sequence based PCA Plot of the family - PF06841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=19 Length=8
Motif3 Start=102 Length=11
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay