3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06839

Details:

PFam ID : PF06839

PFam Domain Description : GRF zinc finger

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 433

Average sequence length: 44.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06839	D8FKQ6_9FIRM_1_111	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06839	B9IJU7_POPTR_9_52	99.7

Sequence based PCA Plot of the family - PF06839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=11
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay