3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06838

Details:

PFam ID : PF06838

PFam Domain Description : Aluminium resistance protein

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 286

Average sequence length: 374.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06838	D8FKQ6_9FIRM_1_111	17.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06838	D6MI86_9CLOT_19_268	99.6

Sequence based PCA Plot of the family - PF06838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay