3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06837

Details:

PFam ID : PF06837

PFam Domain Description : Fijivirus 64 kDa capsid protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 171

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06837	A3Y520_9GAMM_38_132	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06837	Q8BC68_RBSDV_1_209	100

Sequence based PCA Plot of the family - PF06837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay