3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06835

Details:

PFam ID : PF06835

PFam Domain Description : Lipopolysaccharide-assembly, LptC-related

Number of Sequence in 50% Dataset : 381

Number of Sequence in Full Dataset : 777

Average sequence length: 158.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06835	C9YCQ6_9BURK_18_105	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06835	B5YBR7_DICT6_11_116	100

Sequence based PCA Plot of the family - PF06835 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=52 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay