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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06834
Details:

PFam ID : PF06834

PFam Domain Description : TraU protein

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 184

Average sequence length: 270.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06834C6N6F6_9GAMM_32_31488.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06834D1DCS7_NEIGO_32_356100
Sequence based PCA Plot of the family - PF06834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=21 Length=8
Motif3 Start=188 Length=8
Motif4 Start=284 Length=14
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay