3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06834 Details: PFam ID : PF06834 PFam Domain Description : TraU protein Number of Sequence in 50% Dataset : 52 Number of Sequence in Full Dataset : 184 Average sequence length: 270.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06834C6N6F6_9GAMM_32_31488.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06834D1DCS7_NEIGO_32_356100 Sequence based PCA Plot of the family - PF06834 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=57 Length=8Motif2 Start=21 Length=8Motif3 Start=188 Length=8Motif4 Start=284 Length=14 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF06834
PFam Domain Description : TraU protein
Number of Sequence in 50% Dataset : 52
Number of Sequence in Full Dataset : 184
Average sequence length: 270.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER