3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06831

Details:

PFam ID : PF06831

PFam Domain Description : Formamidopyrimidine-DNA glycosylase H2TH domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 1458

Average sequence length: 91.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06831	F2U7C5_9EUKA_156_231	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06831	D0LRE6_HALO1_130_240	100

Sequence based PCA Plot of the family - PF06831 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=48 Length=26
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay