3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06827

Details:

PFam ID : PF06827

PFam Domain Description : Zinc finger found in FPG and IleRS

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 1693

Average sequence length: 29.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06827	C3DSW6_BACTS_41_66	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06827	Q1NMI2_9DELT_325_343	63

Sequence based PCA Plot of the family - PF06827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay