3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06825

Details:

PFam ID : PF06825

PFam Domain Description : Heat shock factor binding protein 1

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 108

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06825	B3L512_PLAKH_54_105	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06825	YB7F_SCHPO_15_68	99.0

Sequence based PCA Plot of the family - PF06825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay