3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06818

Details:

PFam ID : PF06818

PFam Domain Description : Ferredoxin-dependent bilin reductase

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 69

Average sequence length: 165.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06818	B4NPX4_DROWI_434_665	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06818	B3GQX4_BOMMO_205_437	100

Sequence based PCA Plot of the family - PF06818 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=172 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay