3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06814

Details:

PFam ID : PF06814

PFam Domain Description : Lung seven transmembrane receptor

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 292

Average sequence length: 247.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06814	C4M325_ENTHI_67_341	64.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06814	C4R6H5_PICPG_143_456	100

Sequence based PCA Plot of the family - PF06814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=52 Length=8
Motif3 Start=295 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay