3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06813

Details:

PFam ID : PF06813

PFam Domain Description : Nodulin-like

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 272

Average sequence length: 214.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06813	A5E4P8_LODEL_6_176	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06813	C4J645_MAIZE_1_150	100

Sequence based PCA Plot of the family - PF06813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=238 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay