3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06812

Details:

PFam ID : PF06812

PFam Domain Description : ImpA-related N-terminal

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 400

Average sequence length: 61.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06812	D6SPP4_9DELT_36_97	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06812	A3Y8L9_9GAMM_61_123	100

Sequence based PCA Plot of the family - PF06812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=18
Motif3 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay