3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06809

Details:

PFam ID : PF06809

PFam Domain Description : Neural proliferation differentiation control-1 protein (NPDC1)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 47

Average sequence length: 174.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06809	Q3KTI9_SCHJA_1_44	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06809	F1QQY1_DANRE_1_280	100

Sequence based PCA Plot of the family - PF06809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=36 Length=8
Motif3 Start=1 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay