3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06808

Details:

PFam ID : PF06808

PFam Domain Description : DctM-like transporters

Number of Sequence in 50% Dataset : 466

Number of Sequence in Full Dataset : 3063

Average sequence length: 400.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06808	D0DE57_9RHOB_1_116	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06808	D0DDS9_9RHOB_6_174	99.9

Sequence based PCA Plot of the family - PF06808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=100 Length=8
Motif3 Start=130 Length=8
Motif4 Start=113 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay