3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06805

Details:

PFam ID : PF06805

PFam Domain Description : Bacteriophage lambda tail assembly protein I

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 126

Average sequence length: 80.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06805	F0QM59_ACIBD_1_111	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06805	F0QM59_ACIBD_1_111	92

Sequence based PCA Plot of the family - PF06805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=3 Length=18
Motif3 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay