3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06804

Details:

PFam ID : PF06804

PFam Domain Description : NlpB/DapX lipoprotein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 240

Average sequence length: 232.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06804	B8KQB4_9GAMM_14_324	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06804	C4EYX8_HAEIF_30_215	100

Sequence based PCA Plot of the family - PF06804 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=244 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay