3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06794

Details:

PFam ID : PF06794

PFam Domain Description : Uncharacterised protein family (UPF0270)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 138

Average sequence length: 69.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06794	A4BHE1_9GAMM_1_70	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06794	C4RXS2_YERBE_1_50	100

Sequence based PCA Plot of the family - PF06794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=20 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay