3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06793

Details:

PFam ID : PF06793

PFam Domain Description : Uncharacterised protein family (UPF0262)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 102

Average sequence length: 155.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06793	A9ENP2_SORC5_8_151	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06793	E8RN33_9CAUL_1_151	100

Sequence based PCA Plot of the family - PF06793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=21 Length=8
Motif3 Start=131 Length=8
Motif4 Start=102 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay