3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06792

Details:

PFam ID : PF06792

PFam Domain Description : Uncharacterised protein family (UPF0261)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 196

Average sequence length: 365.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06792	E7A053_9BASI_7_454	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06792	D0PGP5_BRUSU_299_388	100

Sequence based PCA Plot of the family - PF06792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=428 Length=8
Motif2 Start=236 Length=11
Motif3 Start=9 Length=11
Motif4 Start=204 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay