3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06790

Details:

PFam ID : PF06790

PFam Domain Description : Uncharacterised protein family (UPF0259)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 98

Average sequence length: 206.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06790	A3XNB6_LEEBM_77_215	24.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06790	Y365_WIGBR_1_253	100

Sequence based PCA Plot of the family - PF06790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=8 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay