3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06789

Details:

PFam ID : PF06789

PFam Domain Description : Uncharacterised protein family (UPF0258)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 14

Average sequence length: 131.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06789	Q4SBX3_TETNG_643_798	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06789	Q4T9T5_TETNG_36_210	100

Sequence based PCA Plot of the family - PF06789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=105 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay