3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06788

Details:

PFam ID : PF06788

PFam Domain Description : Uncharacterised protein family (UPF0257)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 29

Average sequence length: 218.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06788	C4SVQ3_YERFR_1_61	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06788	E0SMK7_DICD3_1_241	100

Sequence based PCA Plot of the family - PF06788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay