3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06784

Details:

PFam ID : PF06784

PFam Domain Description : Uncharacterised protein family (UPF0240)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 52

Average sequence length: 157.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06784	Q9CTZ6_MOUSE_1_54	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06784	B7QDT8_IXOSC_1_179	100

Sequence based PCA Plot of the family - PF06784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay