3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06783

Details:

PFam ID : PF06783

PFam Domain Description : Uncharacterised protein family (UPF0239)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 29

Average sequence length: 81.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06783	E4SE04_CALK2_1_93	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06783	Q5ZI53_CHICK_1_85	100

Sequence based PCA Plot of the family - PF06783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay