3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06778

Details:

PFam ID : PF06778

PFam Domain Description : Chlorite dismutase

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 256

Average sequence length: 186.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06778	D4N5N0_9BACT_2_119	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06778	B4D0H2_9BACT_35_261	100

Sequence based PCA Plot of the family - PF06778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=27 Length=11
Motif3 Start=133 Length=8
Motif4 Start=90 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay